Amsterdam Neuroscience - Cellular and Molecular Mechanisms

Research Output

2007

Measurement system analysis for categorical measurements: Agreement and kappa-type indices

De Mast, J. & Van Wieringen, W. N., 1 Jan 2007, In : Journal of quality technology . 39, 3, p. 191-202 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

MicroRNAs specific for immune-privileged diffuse large B-cell lymphoma

Robertus, J., Harms, G., Blokzijl, T., de Jong, D., Booman, M., Rosati, S., Schuuring, E., Kluin, P. M. & van den Berg, A., 16 Nov 2007, In : Blood. 110, 11, p. 468A-468A

Research output: Contribution to journalArticleAcademicpeer-review

Normalized, segmented or called aCGH data?

Van Wieringen, W. N., Van De Wiel, M. A. & Ylstra, B., 1 Dec 2007, In : Cancer Informatics. 3, p. 321-327 7 p.

Research output: Contribution to journalReview articleAcademicpeer-review

Pin1 levels are downregulated during ER stress in human neuroblastoma cells

Kap, Y. S., Hoozemans, J. J. M., Bodewes, A. J., Zwart, R., Meijer, O. C., Baas, F. & Scheper, W., Jan 2007, In : Neurogenetics. 8, 1, p. 21-7 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Pontocerebellar hypoplasia type 2: a neuropathological update

Barth, P. G., Aronica, E., de Vries, L. S., Nikkels, P. G. J., Scheper, W., Hoozemans, J. J., Poll-The, B-T. & Troost, D., Oct 2007, In : Acta Neuropathologica. 114, 4, p. 373-386

Research output: Contribution to journalArticleAcademicpeer-review

Profiling of apoptosis genes allows for clinical stratification of primary nodal diffuse large B-cell lymphomas

Muris, J. J. F., Ylstra, B., Cillessen, S. A. G. M., Ossenkoppele, G. J., Kluin-Nelemans, J. C., Eijk, P. P., Nota, B., Tijssen, M., De Boer, W. P. H., Van De Wiel, M., Van Den Ijssel, P. R. L. A., Jansen, P., De Bruin, P. C., Van Krieken, J. H. J. M., Meijer, G. A., Meijer, C. J. L. M. & Oudejans, J. J., 1 Jan 2007, In : British Journal of Haematology. 136, 1, p. 38-47 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Rab6 is increased in Alzheimer's disease brain and correlates with endoplasmic reticulum stress

Scheper, W., Hoozemans, J. J. M., Hoogenraad, C. C., Rozemuller, A. J. M., Eikelenboom, P. & Baas, F., Oct 2007, In : Neuropathology and Applied Neurobiology. 33, 5, p. 523-32 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

The involvement of aβ in the neuroinflammatory response

Eikelenboom, P., Van Gool, W. A., Rozemuller, A. J. M., Scheper, W., Veerhuis, R. & Hoozemans, J. J. M., 1 Dec 2007, Abeta Peptide and Alzheimer's Disease: Celebrating a Century of Research. Springer London, p. 52-82 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

The role of Rab3a in secretory vesicle docking requires association/dissociation of guanidine phosphates and Munc18-1

van Weering, J. R. T., Toonen, R. F. & Verhage, M., 18 Jul 2007, In : PLoS ONE. 2, 7, e616.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Whole brain analysis of T2* weighted baseline FMRI signal in dementia

Rombouts, S. A. R. B., Scheltens, P., Kuijer, J. P. A. & Barkhof, F., 1 Dec 2007, In : Human Brain Mapping. 28, 12, p. 1313-1317 5 p.

Research output: Contribution to journalArticleAcademicpeer-review

2008

Acquisition of granule neuron precursor identity is a critical determinant of progenitor cell competence to form Shh-induced medulloblastoma

Schüller, U., Heine, V. M., Mao, J., Kho, A. T., Dillon, A. K., Han, Y-G., Huillard, E., Sun, T., Ligon, A. H., Qian, Y., Ma, Q., Alvarez-Buylla, A., McMahon, A. P., Rowitch, D. H. & Ligon, K. L., 12 Aug 2008, In : Cancer Cell. 14, 2, p. 123-34 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

A general test for gene-environment interaction in sib pair-based association analysis of quantitative traits

Van Der Sluis, S., Dolan, C. V., Neale, M. C. & Posthuma, D., 1 Jul 2008, In : Behavior Genetics. 38, 4, p. 372-389 18 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Anaplastic Large-Cell Lymphoma in Women With Breast Implants

de Jong, D., Vasmel, W. L. E., de Boer, J. P., Verhave, G., Barbe, E., Casparie, M. K. & van Leeuwen, F. E., 5 Nov 2008, In : JAMA. 300, 17, p. 2030-2035

Research output: Contribution to journalArticleAcademicpeer-review

Comprehensive analysis of GST-pi expression in B-cell lymphomas: Correlation with histological subtypes and survival

Thieblemont, C., Rolland, D., Baseggio, L., Felman, P., Gazzo, S., Callet-Bauchu, E., Traverse-Glehen, A., Houlgatte, R., Fu, K., Weisenburger, D., De Jong, D., Jaffe, E. S., Rosenwald, A., Ott, G., Coiffier, B. & Berger, F., Jul 2008, In : Leukemia and Lymphoma. 49, 7, p. 1403-6 4 p.

Research output: Contribution to journalArticleAcademicpeer-review

Flow cytometric lymphocyte subset enumeration: 10 Years of external quality assessment in the benelux countries

Levering, W. H. B. M., Van Wieringen, W. N., Kraan, J., Van Beers, W. A. M., Sintnicolaas, K., Van Rhenen, D. J. & Gratama, J. W., 1 Mar 2008, In : Cytometry Part B - Clinical Cytometry. 74, 2, p. 79-90 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Gene-environment interaction in adults' IQ scores: Measures of past and present environment

Van Der Sluis, S., Willemsen, G., De Geus, E. J. C., Boomsma, D. I. & Posthuma, D., 1 Jul 2008, In : Behavior Genetics. 38, 4, p. 348-360 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Gene expression profiling to identify the histogenetic origin of metastatic adenocarcinomas of unknown primary

Horlings, H. M., van Laar, R. K., Kerst, J-M., Helgason, H. H., Wesseling, J., van der Hoeven, J. J. M., Warmoes, M. O., Floore, A., Witteveen, A., Lahti-Domenici, J., Glas, A. M., Van't Veer, L. J. & de Jong, D., 20 Sep 2008, In : Journal of Clinical Oncology. 26, 27, p. 4435-4441

Research output: Contribution to journalArticleAcademicpeer-review

Inflammation Related Factors: Role in Alzheimer’s Disease and Use as Biomarkers

Hoozemans, JJM., Veerhuis, R., Mulder, SD., Verwey, NA., Mulder, C., Hack, C. E., Blankenstein, MA. & Eikelenboom, P., 1 Oct 2008, Biomarkers for Early Diagnosis of Alzheimer's Disease. 2008, 4th quarter: NOVA Science publishers, Inc., p. 157-210 53 p. Chapter 7

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Inflammatory cells and immune microenvironment in malignant lymphoma

de Jong, D. & Enblad, G., Dec 2008, In : Journal of Internal Medicine. 264, 6, p. 528-536

Research output: Contribution to journalArticleAcademicpeer-review

Long-term results of stomach-conserving therapy in gastric MALT lymphoma

Vrieling, C., de Jong, D., Boot, H., de Boer, J. P., Wegman, F. & Aleman, B. M. P., Jun 2008, In : Radiotherapy and Oncology. 87, 3, p. 405-411

Research output: Contribution to journalArticleAcademicpeer-review

Paracrine inhibition of osteoblast differentiation induced by neuroblastoma cells

Granchi, D., Baglìo, S. R., Amato, I., Giunti, A. & Baldini, N., 1 Oct 2008, In : International Journal of Cancer. 123, 7, p. 1526-35 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Power calculations using exact data simulation: A useful tool for genetic study designs

Van Der Sluis, S., Dolan, C. V., Neale, M. C. & Posthuma, D., 1 Mar 2008, In : Behavior Genetics. 38, 2, p. 202-211 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Refinement of breast cancer classification by molecular characterization of histological special types

Weigelt, B., Horlings, H. M., Kreike, B., Hayes, M. M., Hauptmann, M., Wessels, L. F. A., de Jong, D., de Vijver, M. J. V., Van't Veer, L. J. & Peterse, J. L., Oct 2008, In : Journal of Pathology. 216, 2, p. 141-150

Research output: Contribution to journalArticleAcademicpeer-review

Sex differences on the WISC-R in Belgium and The Netherlands

van der Sluis, S., Derom, C., Thiery, E., Bartels, M., Polderman, T. J. C., Verhulst, F. C., Jacobs, N., van Gestel, S., de Geus, E. J. C., Dolan, C. V., Boomsma, D. I. & Posthuma, D., 1 Jan 2008, In : Intelligence. 36, 1, p. 48-67 20 p.

Research output: Contribution to journalArticleAcademicpeer-review

The role of the p53 pathway in the treatment of follicular lymphoma

Knoops, L. & de Jong, D., 15 Feb 2008, In : Cell Cycle. 7, 4, p. 436-439

Research output: Contribution to journalArticleAcademicpeer-review

Whole-genome scanning by array comparative genomic hybridization as a clinical tool for risk assessment in chronic lymphocytic leukemia

Gunn, S. R., Mohammed, M. S., Gorre, M. E., Cotter, P. D., Kim, J., Bahler, D. W., Preobrazhensky, S. N., Higgins, R. A., Bolla, A. R., Ismail, S. H., de Jong, D., Eldering, E., van Oers, M. H. J., Mellink, C. H. M., Keating, M. J., Schlette, E. J., Abruzzo, L. V. & Robetorye, R. S., Sep 2008, In : The Journal of molecular diagnostics. 10, 5, p. 442-451

Research output: Contribution to journalArticleAcademicpeer-review

2009

Dual modulation of CNS voltage-gated calcium channels by cannabinoids: Focus on CB1 receptor-independent effects

Lozovaya, N., Min, R., Tsintsadze, V. & Burnashev, N., Sep 2009, In : Cell Calcium. 46, 3, p. 154-62 9 p.

Research output: Contribution to journalReview articleAcademicpeer-review

Endoplasmic reticulum protein quality control in neurodegenerative disease: the good, the bad and the therapy

Scheper, W. & Hoozemans, J. J. M., 2009, In : Current Medicinal Chemistry. 16, 5, p. 615-26 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Endoplasmic Reticulum Stress in Neurodegeneration

Hoozemans, J. J. M. & Scheper, W., 2009, Protein Folding and Misfolding: Neurodegenerative Diseases. Ovádi, J. & Orosz, F. (eds.). Dordrecht: Springer Netherlands, p. 111-132 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

Gray zones around diffuse large B cell lymphoma. Conclusions based on the workshop of the XIV meeting of the European Association for Hematopathology and the Society of Hematopathology in Bordeaux, France

Quintanilla-Martinez, L., de Jong, D., de Mascarel, A., Hsi, E. D., Kluin, P., Natkunam, Y., Parrens, M., Pileri, S. & Ott, G., 22 Dec 2009, In : JOURNAL OF HEMATOPATHOLOGY. 2, 4, p. 211-36 26 p.

Research output: Contribution to journalArticleAcademicpeer-review

Hedgehog signaling has a protective effect in glucocorticoid-induced mouse neonatal brain injury through an 11betaHSD2-dependent mechanism

Heine, V. M. & Rowitch, D. H., Feb 2009, In : Journal of Clinical Investigation. 119, 2, p. 267-77 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Osteogenic properties of late adherent subpopulations of human bone marrow stromal cells

Leonardi, E., Ciapetti, G., Baglìo, S. R., Devescovi, V., Baldini, N. & Granchi, D., Nov 2009, In : Histochemistry and Cell Biology. 132, 5, p. 547-57 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Small-molecule inhibitors reveal multiple strategies for Hedgehog pathway blockade

Hyman, J. M., Firestone, A. J., Heine, V. M., Zhao, Y., Ocasio, C. A., Han, K., Sun, M., Rack, P. G., Sinha, S., Wu, J. J., Solow-Cordero, D. E., Jiang, J., Rowitch, D. H. & Chen, J. K., 18 Aug 2009, In : Proceedings of the National Academy of Sciences of the United States of America. 106, 33, p. 14132-7 6 p.

Research output: Contribution to journalArticleAcademicpeer-review

SOX11 expression is highly specific for mantle cell lymphoma and identifies the cyclin D1-negative subtype

Mozos, A., Royo, C., Hartmann, E., De Jong, D., Baró, C., Valera, A., Fu, K., Weisenburger, D. D., Delabie, J., Chuang, S-S., Jaffe, E. S., Ruiz-Marcellan, C., Dave, S., Rimsza, L., Braziel, R., Gascoyne, R. D., Solé, F., López-Guillermo, A., Colomer, D., Staudt, L. M. & 4 others, Rosenwald, A., Ott, G., Jares, P. & Campo, E., Nov 2009, In : Haematologica. 94, 11, p. 1555-62 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

The Retromer Coat Complex Coordinates Endosomal Sorting and Dynein-Mediated Transport, with Carrier Recognition by the trans-Golgi Network

Wassmer, T., Attar, N., Harterink, M., van Weering, J. R. T., Traer, C. J., Oakley, J., Goud, B., Stephens, D. J., Verkade, P., Korswagen, H. C. & Cullen, P. J., 21 Jul 2009, In : Developmental Cell. 17, 1, p. 110-122 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2010

Always around, never the same: Pathways of amyloid beta induced neurodegeneration throughout the pathogenic cascade of Alzheimer's disease

Hoozemans, J. J. M., Chafekar, S. M., Baas, F., Eikelenboom, P. & Scheper, W., 1 Jan 2010, In : Frontiers in Medicinal Chemistry. 5, 1, p. 1-14 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Biological basis for the use of autologous bone marrow stromal cells in the treatment of congenital pseudarthrosis of the tibia

Granchi, D., Devescovi, V., Baglìo, S. R., Leonardi, E., Donzelli, O., Magnani, M., Stilli, S., Giunti, A. & Baldini, N., Mar 2010, In : Bone. 46, 3, p. 780-8 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

DAG lipase involvement in depolarization-induced suppression of inhibition: does endocannabinoid biosynthesis always meet the demand?

Min, R., Di Marzo, V. & Mansvelder, H. D., Dec 2010, In : The Neuroscientist : a review journal bringing neurobiology, neurology and psychiatry. 16, 6, p. 608-13 6 p.

Research output: Contribution to journalReview articleAcademicpeer-review

Diacylglycerol lipase is not involved in depolarization-induced suppression of inhibition at unitary inhibitory connections in mouse hippocampus

Min, R., Testa-Silva, G., Heistek, T. S., Canto, C. B., Lodder, J. C., Bisogno, T., Di Marzo, V., Brussaard, A. B., Burnashev, N. & Mansvelder, H. D., 17 Feb 2010, In : Journal of Neuroscience. 30, 7, p. 2710-5 6 p.

Research output: Contribution to journalArticleAcademicpeer-review

Gene expression patterns related to osteogenic differentiation of bone marrow-derived mesenchymal stem cells during ex vivo expansion

Granchi, D., Ochoa, G., Leonardi, E., Devescovi, V., Baglìo, S. R., Osaba, L., Baldini, N. & Ciapetti, G., Jun 2010, In : Tissue Engineering Part C. Methods. 16, 3, p. 511-24 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Intracellular membrane traffic at high resolution

van Weering, J. R. T., Brown, E., Sharp, T. H., Mantell, J., Cullen, P. J. & Verkade, P., 29 Sep 2010, In : Methods in Cell Biology. 96, C, p. 619-648 30 p.

Research output: Contribution to journalArticleAcademicpeer-review

Phenotypic Complexity, Measurement Bias, and Poor Phenotypic Resolution Contribute to the Missing Heritability Problem in Genetic Association Studies

van der Sluis, S., Verhage, M., Posthuma, D. & Dolan, C. V., 2010, In : PLoS ONE. 5, 11, p. e13929 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
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Recent highlights on bone stem cells: a report from Bone Stem Cells 2009, and not only…

Cenni, E., Perut, F., Baglìo, S. R., Fiorentini, E. & Baldini, N., Nov 2010, In : Journal of Cellular and Molecular Medicine. 14, 11, p. 2614-21 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

SNX-BAR proteins in phosphoinositide-mediated, tubular-based endosomal sorting

van Weering, J. R. T., Verkade, P. & Cullen, P. J., Jun 2010, In : Seminars in Cell and Developmental Biology. 21, 4, p. 371-380 10 p.

Research output: Contribution to journalReview articleAcademicpeer-review

2011

A SNX3-dependent retromer pathway mediates retrograde transport of the Wnt sorting receptor Wntless and is required for Wnt secretion

Harterink, M., Port, F., Lorenowicz, M. J., McGough, I. J., Silhankova, M., Betist, M. C., Van Weering, J. R. T., Van Heesbeen, R. G. H. P., Middelkoop, T. C., Basler, K., Cullen, P. J. & Korswagen, H. C., 1 Aug 2011, In : Nature Cell Biology. 13, 8, p. 914-923 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Delineation of chondroid lipoma: an immunohistochemical and molecular biological analysis

de Vreeze, R. S. A., van Coevorden, F., Boerrigter, L., Nederlof, P. M., Haas, R. L., Bras, J., Rosenwald, A., Mentzel, T. & de Jong, D., 2011, In : Sarcoma. 2011, p. 638403

Research output: Contribution to journalArticleAcademicpeer-review

Neuroblastoma and bone metastases: clinical significance and prognostic value of Dickkopf 1 plasma levels

Granchi, D., Corrias, M. V., Garaventa, A., Baglìo, S. R., Cangemi, G., Carlini, B., Paolucci, P., Giunti, A. & Baldini, N., Jan 2011, In : Bone. 48, 1, p. 152-9 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Prognostic significance of immunohistochemical biomarkers in diffuse large B-cell lymphoma: a study from the Lunenburg Lymphoma Biomarker Consortium

Salles, G., de Jong, D., Xie, W., Rosenwald, A., Chhanabhai, M., Gaulard, P., Klapper, W., Calaminici, M., Sander, B., Thorns, C., Campo, E., Molina, T., Lee, A., Pfreundschuh, M., Horning, S., Lister, A., Sehn, L. H., Raemaekers, J., Hagenbeek, A., Gascoyne, R. D. & 1 others, Weller, E., 30 Jun 2011, In : Blood. 117, 26, p. 7070-8 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Signaling: Retromer arrests receptor on the run

Van Weering, J. R. T. & Cullen, P. J., May 2011, In : Nature Chemical Biology. 7, 5, p. 251-252 2 p.

Research output: Contribution to journalArticleAcademicpeer-review

The unfolded protein response and proteostasis in Alzheimer disease: preferential activation of autophagy by endoplasmic reticulum stress

Scheper, W., Nijholt, D. A. T. & Hoozemans, J. J. M., Aug 2011, In : Autophagy. 7, 8, p. 910-911 2 p.

Research output: Contribution to journalArticleAcademicpeer-review