Amsterdam Neuroscience - Cellular and Molecular Mechanisms

Research Output

Experience with HPV self-sampling and clinician-based sampling in women attending routine cervical screening in the Netherlands

Polman, N. J., de Haan, Y., Veldhuijzen, N. J., Heideman, D. A. M., de Vet, H. C. W., Meijer, C. J. L. M., Massuger, L. F. A. G., van Kemenade, F. J. & Berkhof, J., 1 Aug 2019, In : Preventive Medicine. 125, p. 5-11

Research output: Contribution to journalArticleAcademicpeer-review

Experimental evidence of oxidative stress in patients with L-2-hydroxyglutaric aciduria and that L-carnitine attenuates in vitro DNA damage caused by D-2-hydroxyglutaric and L-2-hydroxyglutaric acids

Rodrigues, D. G. B., de Moura Coelho, D., Sitta, Â., Jacques, C. E. D., Hauschild, T., Manfredini, V., Bakkali, A., Struys, E. A., Jakobs, C., Wajner, M. & Vargas, C. R., 1 Aug 2017, In : Toxicology in Vitro. 42, p. 47-53 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

ExploreASL: an image processing pipeline for multi-center ASL perfusion MRI studies

Mutsaerts, H. J. M. M., Petr, J., Groot, P., Vandemaele, P., Ingala, S., Robertson, A. D., Václavů, L., Groote, I., Kuijf, H., Zelaya, F., O'Daly, O., Hilal, S., Wink, A. M., Kant, I., Caan, M. W. A., Morgan, C., de Bresser, J., Lysvik, E., Schrantee, A., Bjørnebekk, A. & 23 others, Clement, P., Shirzadi, Z., Kuijer, J. P. A., Wottschel, V., Anazodo, U. C., Pajkrt, D., Richard, E., Bokkers, R. P. H., Reneman, L., Masellis, M., Günther, M., MacIntosh, B. J., Achten, E., Chappell, M. A., van Osch, M. J. P., Golay, X., Thomas, D. L., de Vita, E., Bjørnerud, A., Nederveen, A., Hendrikse, J., Asllani, I. & Barkhof, F., 8 Jun 2020, In : NeuroImage. 219, p. 117031 117031.

Research output: Contribution to journalArticleAcademicpeer-review

ExploreASL: image processing toolbox for multi-center arterial spin labeling population analyses

Mutsaerts, HJMM., Petr, J., Lysvik, E., Schrantee, A., Shirzadi, Z., Zelaya, F., Groote, I., O'Daly, O., Kuijer, J., de Bresser, J., Richard, E., Caan, M., van Osch, M., Golay, X., Reneman, L., Macintosh, B., Masellis, M., Hendrikse, J., Barkhof, F., Bjørnerud, A. & 3 others, Nederveen, A., Asllani, I. & Groot, P., 2017.

Research output: Contribution to conferencePaperAcademic

Exploring resting state connectivity in patients with psychotic depression

Oudega, M. L., van der Werf, Y. D., Dols, A., Wattjes, M. P., Barkhof, F., Bouckaert, F., Vandenbulcke, M., de Winter, F-L., Sienaert, P., Eikelenboom, P., Stek, M. L., van den Heuvel, O. A., Emsell, L., Rhebergen, D. & van Exel, E., 2019, In : PLoS ONE. 14, 1, e0209908.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Exploring the role of low-frequency and rare exonic variants in alcohol and tobacco use

Marees, A. T., Hammerschlag, A. R., Bastarache, L., de Kluiver, H., Vorspan, F., van den Brink, W., Smit, D. J., Denys, D., Gamazon, E. R., Li-Gao, R., Breetvelt, E. J., de Groot, M. C. H., Galesloot, T. E., Vermeulen, S. H., Poppelaars, J. L., Souverein, P. C., Keeman, R., de Mutsert, R., Noordam, R., Rosendaal, F. R. & 13 others, Stringa, N., Mook-Kanamori, D. O., Vaartjes, I., Kiemeney, L. A., den Heijer, M., van Schoor, N. M., Klungel, O. H., Maitland-Van der Zee, A. H., Schmidt, M. K., Polderman, T. J. C., van der Leij, A. R., Posthuma, D. & Derks, E. M., 1 Jul 2018, In : Drug and Alcohol Dependence. 188, p. 94-101 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Expression and characterization of two differentiation antigens in human stratified squamous epithelia and carcinomas

Quak, J. J., Schrijvers, A. H. G. J., Brakkee, J. G. P., Davis, H. D., Scheper, R. J., Meijer, C. J. L. M., Snow, G. B. & van Donoen, G. A. M. S., 1 Jan 1992, In : International Journal of Cancer. 50, 4, p. 507-513 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Expression microarray analysis and oligo array comparative genomic hybridization of acquired gemcitabine resistance in mouse colon reveals selection for chromosomal aberrations

Van De Wiel, M. A., Costa, J. L., Smid, K., Oudejans, C. B. M., Bergman, A. M., Meijer, G. A., Peters, G. J. & Ylstra, B., 15 Nov 2005, In : Cancer Research. 65, 22, p. 10208-10213 6 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Expression of CD3-ζ on T-cells in primary cervical carcinoma and in metastasis-positive and -negative pelvic lymph nodes

De Gruijl, T. D., Bontkes, H. J., Peccatori, F., Gallee, M. P. W., Helmerhorst, T. J. M., Verheijen, R. H. M., Aarbiou, J., Mulder, W. M. C., Walboomers, J. M. M., Meijer, C. J. L. M., Van De Vange, N. & Scheper, R. J., 28 Feb 1999, In : British Journal of Cancer. 79, 7-8, p. 1127-1132 6 p.

Research output: Contribution to journalArticleAcademicpeer-review

Expression of Epstein-Barr virus (EBV) transcripts encoding homologues to important human proteins in diverse EBV associated diseases

Hayes, D. P., Brink, A. A., Vervoort, M. B., Middeldorp, J. M., Meijer, C. J. & van den Brule, A. J., Apr 1999, In : Modern Pathology. 52, 2, p. 97-103 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Expression of epstein-barr virus encoded nuclear antigen 1 in benign and malignant tissues harbouring EBV

Oudejans, J. J., Dukers, D. F., Jiwa, N. M., van den Brule, A. J., Grässer, F. A., de Bruin, P. C., Horstman, A., Vos, W., van Gorp, J., Middeldorp, J. M. & Meijer, C. J., Nov 1996, In : Journal of Clinical Pathology. 49, 11, p. 897-902 6 p.

Research output: Contribution to journalArticleAcademicpeer-review

Extension of helix 12 in munc18-1 induces vesicle priming

Munch, A. S., Kedar, G. H., van Weering, J. R. T., Vazquez-Sanchez, S., He, E., André, T., Braun, T., Söllner, T. H., Verhage, M. & Sørensen, J. B., 29 Jun 2016, In : Journal of Neuroscience. 36, 26, p. 6881-6891 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Facing privacy in neuroimaging: removing facial features degrades performance of image analysis methods

de Sitter, A., Visser, M., Brouwer, I., Cover, K. S., van Schijndel, R. A., Eijgelaar, R. S., Müller, D. M. J., Ropele, S., Kappos, L., Rovira, Filippi, M., Enzinger, C., Frederiksen, J., Ciccarelli, O., Guttmann, C. R. G., Wattjes, M. P., Witte, M. G., de Witt Hamer, P. C., Barkhof, F., Vrenken, H. & 2 others, MAGNIMS Study Group & Alzheimer’s Disease Neuroimaging Initiative, Feb 2020, In : European Radiology. 30, 2, p. 1062-1074 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

FAM19A4/miR124-2 methylation in invasive cervical cancer: A retrospective cross-sectional worldwide study

Vink, F. J., Meijer, C. J. L. M., Clifford, G. M., Poljak, M., Oštrbenk, A., Petry, K. U., Rothe, B., Bonde, J., Pedersen, H., de Sanjosé, S., Torres, M., Del Pino, M., Quint, W. G. V., Cuschieri, K., Alcañiz Boada, E., van Trommel, N. E., Lissenberg-Witte, B. I., Floore, A. N., Hesselink, A. T., Steenbergen, R. D. M. & 2 others, Bleeker, M. C. G. & Heideman, D. A. M., 7 Aug 2019, In : International Journal of Cancer.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Familial human prion diseases associated with prion protein mutations Y226X and G131V are transmissible to transgenic mice expressing human prion protein

Race, B., Williams, K., Hughson, A. G., Jansen, C., Parchi, P., Rozemuller, A. J. M. & Chesebro, B., 2018, In : Acta Neuropathologica Communinications. 6, 1, p. 13

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Fbxo41 Promotes Disassembly of Neuronal Primary Cilia

King, C. R., A. A. Quadros, A. R., Chazeau, A., Saarloos, I., van der Graaf, A. J., Verhage, M. & Toonen, R. F., 1 Dec 2019, In : Scientific Reports. 9, 1, 8179.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Feedback learning and behavior problems after pediatric traumatic brain injury

Konigs, M., van Heurn, L. W. E., Vermeulen, R. J., Goslings, J. C., Luitse, J. S. K., Poll-The, B. T., Beelen, A., van der Wees, M., Kemps, R. J. J. K., Catsman-Berrevoets, C. E., Luman, M. & Oosterlaan, J., May 2016, In : Psychological Medicine. 46, 7, p. 1473-1484

Research output: Contribution to journalArticleAcademicpeer-review

Flow cytometric CD34+ stem cell enumeration: Lessons from nine years' external quality assessment within the Benelux countries

Levering, W. H. B. M., Preijers, F. W. M. B., Van Wieringen, W. N., Kraan, J., Van Beers, W. A. M., Sintnicolaas, K., Van Rhenen, D. J. & Gratama, J. W., 15 May 2007, In : Cytometry Part B - Clinical Cytometry. 72, 3, p. 178-188 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Flow cytometric lymphocyte subset enumeration: 10 Years of external quality assessment in the benelux countries

Levering, W. H. B. M., Van Wieringen, W. N., Kraan, J., Van Beers, W. A. M., Sintnicolaas, K., Van Rhenen, D. J. & Gratama, J. W., 1 Mar 2008, In : Cytometry Part B - Clinical Cytometry. 74, 2, p. 79-90 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Fluoride prevents degranulation of the azurophilic and specific granules in electropermeabilized neutrophils

Niessen, H. W., Kessels, G. C. & Verhoeven, A. J., Apr 1994, In : Journal of Leukocyte Biology. 55, 4, p. 489-95 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Folic Acid Impairs the Uptake of 5-Methyltetrahydrofolate in Human Umbilical Vascular Endothelial Cells

Smith, D., Hornstra, J., Rocha, M., Jansen, G., Assaraf, Y., Lasry, I., Blom, H. & Smulders, Y. M., 1 Oct 2017, In : Journal of Cardiovascular Pharmacology. 70, 4, p. 271-275 5 p.

Research output: Contribution to journalArticleAcademicpeer-review

FOLIUMZUUR VOOR ALLE FERTIELE VROUWEN? [3]

Translated title of the contribution: Folic acid for all fertile women? [3]Van Dongen, A. M., Cornel, M. C., De Jong-Van Den Berg, L. T. W., Steegers-Theunissen, R. P. M., Ten Kate, L. P., Roegholt, L. P., Barkhof, F., Boers, G. H. J. & Eskes, T. K. A. B., 1 Jan 1993, In : Nederlands Tijdschrift voor Geneeskunde. 137, 33, p. 1682-1684 3 p.

Research output: Contribution to journalLetterAcademicpeer-review

Forkhead transcription factor FoxM1 regulates mitotic entry and prevents spindle defects in cerebellar granule neuron precursors

Schüller, U., Zhao, Q., Godinho, S. A., Heine, V. M., Medema, R. H., Pellman, D. & Rowitch, D. H., Dec 2007, In : Molecular and Cellular Biology. 27, 23, p. 8259-70 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Frequent monitoring of Epstein-Barr virus DNA load in unfractionated whole blood is essential for early detection of posttransplant lymphoproliferative disease in high-risk patients

Stevens, S. J., Verschuuren, E. A., Pronk, I., van Der Bij, W., Harmsen, M. C., The, T. H., Meijer, C. J., van Den Brule, A. J. & Middeldorp, J. M., 1 Mar 2001, In : Blood. 97, 5, p. 1165-71 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Frequent monitoring of Epstein-Barr virus DNA load in unfractionated whole blood is essential for early detection of post-transplant lymphoproliferative disease in lung transplant patients

Verschuuren, E. A., Stevens, S., Pronk, I., Van Der Bij, W., Harmsen, M. C., The, T. H., Meijer, C. J., Van Den Brule, A. J. & Middeldorp, J. M., Feb 2001, In : Journal of Heart and Lung Transplantation. 20, 2, p. 199-200 2 p.

Research output: Contribution to journalArticleAcademicpeer-review

Frequent reconstitution of IDH2(R140Q) mutant clonal multilineage hematopoiesis following chemotherapy for acute myeloid leukemia

Wiseman, D. H., Williams, E. L., Wilks, D. P., Sun Leong, H., Somerville, T. D. D., Dennis, M. W., Struys, E. A., Bakkali, A., Salomons, G. S. & Somervaille, T. C. P., Sep 2016, In : Leukemia. 30, 9, p. 1946-1950 5 p.

Research output: Contribution to journalArticleAcademicpeer-review

From neural induction towards disease models for Tuberous sclerosis complex using human stem cells

Geeyarpuram Nadadhur, A., 2018

Research output: ThesisResearch VU University Amsterdam, graduation VU University Amsterdam

Open Access

Fronto-limbic structural and functional changes and depression in multiple sclerosis: is there a relationship with cognition?

van Geest, Q., Boeschoten, R. E., Keijzer, M. J., Steenwijk, M. D., Pouwels, P. J. W., Smit, J. H., Uitdehaag, B. M. J., Van Oppen, P., Geurts, J. J. G. & Hulst, H. E., Jul 2017, In : Multiple Sclerosis Journal. 23, 8, p. NP3-NP3

Research output: Contribution to journalMeeting AbstractAcademic

Frontostriatal system in planning complexity: A parametric functional magnetic resonance version of Tower of London task

Van Den Heuvel, O. A., Groenewegen, H. J., Barkhof, F., Lazeron, R. H. C., Van Dyck, R. & Veltman, D. J., 1 Feb 2003, In : NeuroImage. 18, 2, p. 367-374 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Frontotemporal Dementia: Correlations Between Psychiatric Symptoms and Pathology

Scarioni, M., Gami-Patel, P., Timar, Y., Seelaar, H., van Swieten, J. C., Rozemuller, A. J. M., Dols, A., Scarpini, E., Galimberti, D., Hoozemans, J. J. M., Pijnenburg, Y. A. L., Dijkstra, A. A. & Netherlands Brain Bank, 1 Jan 2020, (Accepted/In press) In : Annals of Neurology. 87, 6, 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Functional CD4(+) and CD8(+) T-cell responses induced by autologous mitomycin C treated Epstein-Barr virus transformed lymphoblastoid cell lines

Meij, P., Bloemena, E., Palmen, N., Brink, A., Vervoort, M. B., Meijer, C. J. & Middeldorp, J. M., 25 Feb 2001, In : Cellular Immunology. 208, 1, p. 25-33 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Functional mapping and annotation of genetic associations with FUMA

Watanabe, K., Taskesen, E., Van Bochoven, A. & Posthuma, D., 1 Dec 2017, In : Nature Communications. 8, 1, 1826.

Research output: Contribution to journalArticleAcademicpeer-review

Functional MR imaging in Alzheimer's disease during memory encoding

Rombouts, S. A. R. B., Barkhof, F., Veltman, D. J., Machielsen, W. C. M., Witter, M. P., Bierlaagh, M. A., Lazeron, R. H. C., Valk, J. & Scheltens, P., 29 Nov 2000, In : American Journal of Neuroradiology. 21, 10, p. 1869-1875 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Functional MRI of visual cortex in sedated 18 month-old infants with or without periventricular leukomalacia

Sie, L. T. L., Rombouts, S. A. R. B., Valk, J., Hart, A. A. M., Scheltens, P. & Van Der Knaap, M. S., 26 Jul 2001, In : Developmental Medicine and Child Neurology. 43, 7, p. 486-490 5 p.

Research output: Contribution to journalArticleAcademicpeer-review

Functional segregation of memory for objects and locations

Machielsen, W. C. M., Rombouts, S. A. R. B., Barkhof, F., Scheltens, P. & Witter, M. P., 1 Dec 2000, In : NeuroImage. 11, 5 PART II

Research output: Contribution to journalArticleAcademicpeer-review

Gallbladder and the risk of polyps and carcinoma in metachromatic leukodystrophy

van Rappard, D. F., Bugiani, M., Boelens, J. J., van der Steeg, A., Daams, F., de Meij, T. G. J., van Doorn, M. M. A. C., van Hasselt, P. M., Gouma, D. J., Verbeke, J. I. M. L., Hollak, C. E. M., van Hecke, W., Salomons, G. S., van der Knaap, M. & Wolf, N. I., 5 Jul 2016, In : Neurology. 87, 1, p. 103-111

Research output: Contribution to journalArticleAcademicpeer-review

Gastrointestinal Dysmotility in MNGIE: From thymidine phosphorylase enzyme deficiency to altered interstitial cells of Cajal

Yadak, R., Breur, M. & Bugiani, M., 8 Feb 2019, In : Orphanet Journal of Rare Diseases. 14, 1, 33.

Research output: Contribution to journalReview articleAcademicpeer-review

Open Access

GeneBreak: Detection of recurrent DNA copy number aberration-associated chromosomal breakpoints within genes

Fijneman, R. J. A., van den Broek, E., van Lieshout, S., Rausch, C., Ylstra, B., van de Wiel, M. A., Meijer, G. A. & Abeln, S., 1 Jan 2017, In : F1000Research. 5

Research output: Contribution to journalArticleAcademicpeer-review

Gene discovery and polygenic prediction from a genome-wide association study of educational attainment in 1.1 million individuals

23andMe Research team, 2018, In : Nature Genetics. 50, 8, p. 1112-1121

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Gene-environment interaction in adults' IQ scores: Measures of past and present environment

Van Der Sluis, S., Willemsen, G., De Geus, E. J. C., Boomsma, D. I. & Posthuma, D., 1 Jul 2008, In : Behavior Genetics. 38, 4, p. 348-360 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Gene expression imputation across multiple brain regions provides insights into schizophrenia risk

Huckins, L. M., Dobbyn, A., Ruderfer, D. M., Hoffman, G., Wang, W., Pardiñas, A. F., Rajagopal, V. M., Als, T. D., t. Nguyen, H., Girdhar, K., Boocock, J., Roussos, P., Fromer, M., Kramer, R., Domenici, E., Gamazon, E. R., Purcell, S., CommonMind Consortium, The Schizophrenia Working Group of the PsyUniversity of Copenhagenchiatric Genomics Consortium, iPSYCH-GEMS Schizophrenia Working Group & 12 others, Demontis, D., Børglum, A. D., Walters, J. T. R., C. O’Donovan, M., Sullivan, P., Owen, M. J., Devlin, B., Sieberts, S. K., Cox, N. J., Im, H. K., Sklar, P. & Stahl, E. A., 1 Apr 2019, In : Nature Genetics. 51, 4, p. 659-674 16 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Gene expression patterns in rat dentate granule cells: comparison between fresh and fixed tissue

Qin, Y., Heine, V. M., Karst, H., Lucassen, P. J. & Joëls, M., 30 Dec 2003, In : Journal of Neuroscience Methods. 131, 1-2, p. 205-11 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Gene expression patterns related to osteogenic differentiation of bone marrow-derived mesenchymal stem cells during ex vivo expansion

Granchi, D., Ochoa, G., Leonardi, E., Devescovi, V., Baglìo, S. R., Osaba, L., Baldini, N. & Ciapetti, G., Jun 2010, In : Tissue Engineering Part C. Methods. 16, 3, p. 511-24 14 p.

Research output: Contribution to journalArticleAcademicpeer-review

Gene expression profiling to identify the histogenetic origin of metastatic adenocarcinomas of unknown primary

Horlings, H. M., van Laar, R. K., Kerst, J-M., Helgason, H. H., Wesseling, J., van der Hoeven, J. J. M., Warmoes, M. O., Floore, A., Witteveen, A., Lahti-Domenici, J., Glas, A. M., Van't Veer, L. J. & de Jong, D., 20 Sep 2008, In : Journal of Clinical Oncology. 26, 27, p. 4435-4441

Research output: Contribution to journalArticleAcademicpeer-review

Gene network reconstruction using global-local shrinkage priors

Leday, G. G. R., De Gunst, M. C. M., Kpogbezan, G. B., Van Der Vaart, A. W., Van Wieringen, W. N. & Van De Wiel, M. A., 1 Mar 2017, In : Annals of Applied Statistics. 11, 1, p. 41-68 28 p.

Research output: Contribution to journalArticleAcademicpeer-review

Generalised boundary shift integral for longitudinal assessment of spinal cord atrophy

Prados, F., Moccia, M., Johnson, A., Yiannakas, M., Grussu, F., Cardoso, M. J., Ciccarelli, O., Ourselin, S., Barkhof, F. & Wheeler-Kingshott, C., 2020, In : NeuroImage. 209, 116489.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access