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Research Output 2001 2019

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Article
2019

Aggressive genomic features in clinically indolent primary HHV8-negative effusion-based lymphoma

Mendeville, M., Roemer, M. G. M., van den Hout, M. F. C. M., Los-de Vries, G. T., Bladergroen, R., Stathi, P., Hijmering, N. J., Rosenwald, A., Ylstra, B. & de Jong, D., 24 Jan 2019, In : Blood. 133, 4, p. 377-380 4 p.

Research output: Contribution to journalArticleAcademicpeer-review

Colorectal metastasis to the gallbladder mimicking a primary gallbladder malignancy: histopathological and molecular characteristics

de Bitter, T. J. J., van der Linden, R. L. A., van Vliet, S., Weren, F., Sie, D., Ylstra, B., van der Linden, H. C., Knijn, N., Ligtenberg, M. J. L., van der Post, R. S., Simmer, F. & Nagtegaal, I. D., 2 May 2019, In : Histopathology.

Research output: Contribution to journalArticleAcademicpeer-review

Establishment and Genetic Landscape of Precancer Cell Model Systems from the Head and Neck Mucosal Lining

de Boer, D. V., Brink, A., Buijze, M., Stigter-van Walsum, M., Hunter, K. D., Ylstra, B., Bloemena, E., Leemans, C. R. & Brakenhoff, R. H., Jan 2019, In : Molecular Cancer Research. 17, 1, p. 120-130 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Genomic imbalances defining novel intellectual disability associated loci

Lopes, F. T., Torres, F. T., Soares, G., Barbosa, M., Silva, J., Duque, F., Rocha, M., Sá, J., Oliveira, G., Sá, M. J., Temudo, T., Sousa, S., Marques, C., Lopes, S., Gomes, C., Barros, G., Jorge, A., Rocha, F., Martins, C., Mesquita, S. & 22 othersLoureiro, S., Cardoso, E. M., Cálix, M. J., Dias, A., Martins, C., Mota, C. U. R., Antunes, D., Dupont, J., Figueiredo, S., Figueiroa, S. N., Gama-de-Sousa, S., Cruz, S., Sampaio, A., Eijk, P., Weiss, M. M., Ylstra, B., Rendeiro, P., Tavares, P., Reis-Lima, M., Pinto-Basto, J., Fortuna, A. M. & Maciel, P., 2019, In : Orphanet Journal of Rare Diseases. 14, 1, p. 164

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Spatiotemporal regulation of clonogenicity in colorectal cancer xenografts

van der Heijden, M., Miedema, D. M., Waclaw, B., Veenstra, V. L., Lecca, M. C., Nijman, L. E., van Dijk, E., van Neerven, S. M., Lodestijn, S. C., Lenos, K. J., de Groot, N. E., Prasetyanti, P. R., Varea, A. A., Winton, D. J., Medema, J. P., Morrissey, E., Ylstra, B., Nowak, M. A., Bijlsma, M. F. & Vermeulen, L., 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 13, p. 6140-6145

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2018

ACE: Absolute Copy number Estimation from low-coverage whole-genome sequencing data

Poell, J. B., Mendeville, M., Sie, D., Brink, A., Brakenhoff, R. H. & Ylstra, B., 28 Dec 2018, In : Bioinformatics.

Research output: Contribution to journalArticleAcademicpeer-review

Combination of a six microRNA expression profile with four clinicopathological factors for response prediction of systemic treatment in patients with advanced colorectal cancer

Neerincx, M., Poel, D., Sie, D. L. S., van Grieken, N. C. T., Shankaraiah, R. C., van der Wolf-de Lijster, F. S. W., van Waesberghe, J-H. T. M., Burggraaf, J-D., Eijk, P. P., Verhoef, C., Ylstra, B., Meijer, G. A., van de Wiel, M. A., Buffart, T. E. & Verheul, H. M. W., 2018, In : PLoS ONE. 13, 8, p. e0201809

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Consensus molecular subtype classification of colorectal adenomas

In collaboration with the NGS-ProToCol Consortium:, Komor, M. A., Bosch, L. J. W., Bounova, G., Bolijn, A. S., Delis-van Diemen, P. M., Rausch, C., Hoogstrate, Y., Stubbs, A. P., de Jong, M., Jenster, G., van Grieken, N. C. T., Carvalho, B., Wessels, L. F. A., Jimenez, C. R., Fijneman, R. J. A. & Meijer, G. A., 2018, In : Journal of Pathology. 246, 3, p. 266-276

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Copy number load predicts outcome of metastatic colorectal cancer patients receiving bevacizumab combination therapy

Smeets, D., Miller, I. S., O'Connor, D. P., Das, S., Moran, B., Boeckx, B., Gaiser, T., Betge, J., Barat, A., Klinger, R., van Grieken, N. C. T., Cremolini, C., Prenen, H., Mazzone, M., Depreeuw, J., Bacon, O., Fender, B., Brady, J., Hennessy, B. T., McNamara, D. A. & 13 othersKay, E., Verheul, H. M., Maarten, N., Gallagher, W. M., Murphy, V., Prehn, J. H. M., Koopman, M., Punt, C. J. A., Loupakis, F., Ebert, M. P. A., Ylstra, B., Lambrechts, D. & Byrne, A. T., 5 Oct 2018, In : Nature Communications. 9

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Copy number signatures and mutational processes in ovarian carcinoma

Macintyre, G., Goranova, T. E., De Silva, D., Ennis, D., Piskorz, A. M., Eldridge, M., Sie, D., Lewsley, L. A., Hanif, A., Wilson, C., Dowson, S., Glasspool, R. M., Lockley, M., Brockbank, E., Montes, A., Walther, A., Sundar, S., Edmondson, R., Hall, G. D., Clamp, A. & 19 othersGourley, C., Hall, M., Fotopoulou, C., Gabra, H., Paul, J., Supernat, A., Millan, D., Hoyle, A., Bryson, G., Nourse, C., Mincarelli, L., Sanchez, L. N., Ylstra, B., Jimenez-Linan, M., Moore, L., Hofmann, O., Markowetz, F., McNeish, I. A. & Brenton, J. D., 1 Sep 2018, In : Nature Genetics. 50, 9, p. 1262-1270 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Loss of Chromosome 18q11.2-q12.1 Is Predictive for Survival in Patients With Metastatic Colorectal Cancer Treated With Bevacizumab

van Dijk, E., Biesma, H. D., Cordes, M., Smeets, D., Neerincx, M., Das, S., Eijk, P. P., Murphy, V., Barat, A., Bacon, O., Prehn, J. H. M., Betge, J., Gaiser, T., Fender, B., Meijer, G. A., McNamara, D. A., Klinger, R., Koopman, M., Ebert, M. P. A., Kay, E. W. & 10 othersHennessey, B. T., Verheul, H. M. W., Gallagher, W. M., O'Connor, D. P., Punt, C. J. A., Loupakis, F., Lambrechts, D., Byrne, A. T., van Grieken, N. C. T. & Ylstra, B., 10 Jul 2018, In : Journal of Clinical Oncology. 36, 20, p. 2052-2060 9 p., 36(20).

Research output: Contribution to journalArticleAcademicpeer-review

2017

Apelin: A putative novel predictive biomarker for bevacizumab response in colorectal cancer

Zuurbier, L., Rahman, A., Cordes, M., Scheick, J., Wong, T. J., Rustenburg, F., Joseph, J. C., Dynoodt, P., Casey, R., Drillenburg, P., Gerhards, M. F., Barat, A., Klinger, R., Fender, B., O'Connor, D. P., Betge, J., Ebert, M. P., Gaiser, T., Prehn, J. H. M., Griffioen, A. W. & 7 othersvan Grieken, N. C. T., Ylstra, B., Byrne, A. T., van der Flier, L. G., Gallagher, W. M., Gallagher, W. M. & Postel, R., 1 Jan 2017, In : Oncotarget. 8, 26, p. 42949-42961 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

Assessment of concordance between fresh-frozen and formalin-fixed paraffin embedded tumor DNA methylation using a targeted sequencing approach

Moran, B., Das, S., Smeets, D., Peutman, G., Klinger, R., Fender, B., Connor, K., Ebert, M. P., Gaiser, T., Prehn, J. H. M., Bacon, O., Kay, E. W., Hennessy, B., Murphy, V., Ylstra, B., van Grieken, NCT., Lambrechts, D., Byrne, A. T., Gallagher, W. M. & O'Connor, D. P., 1 Jan 2017, In : Oncotarget. 8, 29, p. 48126-48137 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Decoy receptor 1 (DCR1) promoter hypermethylation and response to irinotecan in metastatic colorectal cancer

Bosch, L. J. W., Trooskens, G., Snaebjornsson, P., Coupé, V. M. H., Mongera, S., Haan, J. C., Richman, S. D., Koopman, M., Tol, J., Meyer, T. D., Louwagie, J., Dehaspe, L., van Grieken, N. C. T., Ylstra, B., Verheul, H. M. W., van Engeland, M., Nagtegaal, I. D., Herman, J. G., Quirke, P., Seymour, M. T. & 4 othersPunt, C. J. A., van Criekinge, W., Carvalho, B. & Meijer, G. A., 1 Jan 2017, In : Oncotarget. 8, 38, p. 63140-63154 15 p.

Research output: Contribution to journalArticleAcademicpeer-review

GeneBreak: Detection of recurrent DNA copy number aberration-associated chromosomal breakpoints within genes

Fijneman, R. J. A., van den Broek, E., van Lieshout, S., Rausch, C., Ylstra, B., van de Wiel, M. A., Meijer, G. A. & Abeln, S., 1 Jan 2017, In : F1000Research. 5

Research output: Contribution to journalArticleAcademicpeer-review

High number of chromosomal copy number aberrations inversely relates to t(11;19)(q21;p13) translocation status in mucoepidermoid carcinoma of the salivary glands

Matse, J. H., Veerman, E. C. I., Bolscher, J. G. M., Leemans, C. R., Ylstra, B. & Bloemena, E., 1 Jan 2017, In : Oncotarget. 8, 41, p. 69456-69464 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Postmortem Examination of an Aggressive Case of Medullary Thyroid Carcinoma Characterized by Catastrophic Genomic Abnormalities

Das, S., Kelly, D., Moran, B., Han, K., Mulligan, N., Barrett, C., Buckley, P. G., McMahon, P., McCaffrey, J., Van Essen, H. F., Connor, K., Lambrechts, D., Ylstra, B., Gallagher, W. M., O’Connor, D. P. & Kelly, C. M., 5 Jun 2017, In : JCO Precision Oncology. -, 1, p. 1-7 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Prognostic relevance of CD163 and CD8 combined with EZH2 and gain of chromosome 18 in follicular lymphoma: a study by the Lunenburg Lymphoma Biomarker Consortium

Stevens, W. B. C., Mendeville, M., Redd, R. A., Clear, A. J., Bladergroen, R., Calaminici, M., Rosenwald, A., Hoster, E., Hiddemann, W., Gaulard, P., Xerri, L., Salles, G., Klapper, W., Pfreundschuh, M., Jack, A., Gascoyne, R. D., Natkunam, Y., Advani, R. H., Kimby, E., Sander, B. & 8 othersSehn, L. H., Hagenbeek, A., Raemaekers, J., Gribben, J., Kersten, M. J., Ylstra, B., Weller, E. & De Jong, D., 31 Jul 2017, In : Haematologica. 102, 8, p. 1413-1423 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Swarm Intelligence-Enhanced Detection of Non-Small-Cell Lung Cancer Using Tumor-Educated Platelets

Best, M. G., Sol, N., In ‘t Veld, S. G. J. G., Vancura, A., Muller, M., Niemeijer, A. L. N., Fejes, A. V., Tjon Kon Fat, L. A., Huis In ‘t Veld, A. E., Leurs, C., Le Large, T. Y., Meijer, L. L., Kooi, I. E., Rustenburg, F., Schellen, P., Verschueren, H., Post, E., Wedekind, L. E., Bracht, J., Esenkbrink, M. & 33 othersWils, L., Favaro, F., Schoonhoven, J. D., Tannous, J., Meijers-Heijboer, H., Kazemier, G., Giovannetti, E., Reijneveld, J. C., Idema, S., Killestein, J., Heger, M., de Jager, S. C., Urbanus, R. T., Hoefer, I. E., Pasterkamp, G., Mannhalter, C., Gomez-Arroyo, J., Bogaard, H. J., Noske, D. P., Vandertop, W. P., van den Broek, D., Ylstra, B., Nilsson, R. J. A., Wesseling, P., Karachaliou, N., Rosell, R., Lee-Lewandrowski, E., Lewandrowski, K. B., Tannous, B. A., de Langen, A. J., Smit, E. F., van den Heuvel, M. M. & Wurdinger, T., 14 Aug 2017, In : Cancer Cell. 32, 2, p. 238-252.e9

Research output: Contribution to journalArticleAcademicpeer-review

2016

Condensin II mutation causes T-cell lymphoma through tissue-specific genome instability

Woodward, J., Taylor, G. C., Soares, D. C., Boyle, S., Sie, D., Read, D., Chathoth, K., Vukovic, M., Tarrats, N., Jamieson, D., Campbell, K. J., Blyth, K., Acosta, J. C., Ylstra, B., Arends, M. J., Kranc, K. R., Jackson, A. P., Bickmore, W. A. & Woods, A. J., 1 Oct 2016, In : Genes and Development. 30, 19, p. 2173-2186

Research output: Contribution to journalArticleAcademicpeer-review

Copy number alterations as predictive biomarkers for response to bevacizumab in metastatic colorectal

van Grieken, N. C., Cordes, M., Verheul, H. M., Neerincx, M., Punt, C., Koopman, M., Meijer, G. A., Murphy, V., Barat, A., Betge, J., Ebert, M., Gaiser, T., Fender, B., Klinger, R., Das, S., Smeets, D., O'Connor, D., Lambrechts, D., Byrne, A. T. & Ylstra, B., 1 Oct 2016, In : Annals of Oncology. 27

Research output: Contribution to journalArticleAcademicpeer-review

Exocytosis of polyubiquitinated proteins in bortezomib-resistant leukemia cells: a role for MARCKS in acquired resistance to proteasome inhibitors

Franke, N. E., Kaspers, G. L., Assaraf, Y. G., van Meerloo, J., Niewerth, D., Kessler, F. L., Poddighe, P. J., Kole, J., Smeets, S. J., Ylstra, B., Bi, C., Chng, W. J., Horton, T. M., Menezes, R. X., Musters, R., Zweegman, S., Jansen, G. & Cloos, J., 15 Nov 2016, In : Oncotarget. 7, 46, p. 74779-74796

Research output: Contribution to journalArticleAcademicpeer-review

Genomic profiling of stage II and III colon cancers reveals APC mutations to be associated with survival in stage III colon cancer patients

van den Broek, E., Krijgsman, O., Sie, D., Tijssen, M., Mongera, S., van de Wiel, M. A., Belt, E. J. T., den Uil, S. H., Bril, H., Stockmann, H. B. A. C., Ylstra, B., Carvalho, B., Meijer, G. A. & Fijneman, R. J. A., 8 Nov 2016, In : Oncotarget. 7, 45, p. 73876-73887

Research output: Contribution to journalArticleAcademicpeer-review

Guidelines for cytogenetic investigations in tumours

Hastings, R. J., Bown, N., Tibiletti, M. G., Debiec-Rychter, M., Vanni, R., Espinet, B., van Roy, N., Roberts, P., van den Berg-de-Ruiter, E., Bernheim, A., Schoumans, J., Chatters, S., Zemanova, Z., Stevens-Kroef, M., Simons, A., Heim, S., Salido, M., Ylstra, B. & Betts, D. R., Jan 2016, In : European Journal of Human Genetics. 24, 1, p. 6-13

Research output: Contribution to journalArticleAcademicpeer-review

Immortalization capacity of HPV types is inversely related to chromosomal instability

Schutze, D. M., Krijgsman, O., Snijders, P. J. F., Ylstra, B., Weischenfeldt, J., Mardin, B. R., Stutz, A. M., Korbel, J. O., de Winter, J. P., Meijer, C. J. L. M., Quint, W. G. V., Bosch, L., Wilting, S. M. & Steenbergen, R. D. M., 21 Jun 2016, In : Oncotarget. 7, 25, p. 37608-37621

Research output: Contribution to journalArticleAcademicpeer-review

MiR expression profiles can predict response to systemic treatment in patients with advanced colorectal cancer

Poel, D., Neerincx, M., Sie, D. L. S., van Grieken, N. C. T., Shankaraiah, R., van der Wolf, F. S. W., van Waesberghe, J. H. T. M., Burggraaf, J. D., Eijk, P. P., Ylstra, B., Verhoef, C., van de Wiel, M. A., Verheul, H. M. W. & Buffart, T. E., Jul 2016, In : Cancer Research. 76

Research output: Contribution to journalArticleAcademicpeer-review

Outcome of Colorectal Cancer Patients Treated with Combination Bevacizumab Therapy: A Pooled Retrospective Analysis of Three European Cohorts from the Angiopredict Initiative

Betge, J., Barat, A., Murphy, V., Hielscher, T., Van Grieken, N. C., Belle, S., Zhan, T., Härtel, N., Kripp, M., Bacon, O., Cordes, M., Kay, E. W., Verheul, H. M. W., Neerincx, M., Hennessy, B., Hofheinz, R. D., Gaiser, T., Ylstra, B., Prehn, J. H. M., Lambrechts, D. & 3 othersByrne, A. T., Ebert, M. P. & Schulte, N., 2016, In : Digestion. 94, 3, p. 129-137 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Reduced genomic tumor heterogeneity after neoadjuvant chemotherapy is related to favorable outcome in patients with esophageal adenocarcinoma

Obulkasim, A., Ylstra, B., van Essen, H. F., Benner, C., Stenning, S., Langley, R., Allum, W., Cunningham, D., Inam, I., Hewitt, L. C., West, N. P., Meijer, G. A., van de Wiel, M. A. & Grabsch, H. I., 12 Jul 2016, In : Oncotarget. 7, 28, p. 44084-44095

Research output: Contribution to journalArticleAcademicpeer-review

Sequencing Structural Variants in Cancer for Precision Therapeutics

Macintyre, G., Ylstra, B. & Brenton, J. D., Sep 2016, In : TRENDS IN GENETICS. 32, 9, p. 530-542

Research output: Contribution to journalArticleAcademicpeer-review

2015

Breast Cancers with a BRCA1-like DNA Copy Number Profile Recur Less Often Than Expected after High-Dose Alkylating Chemotherapy

Schouten, P. C., Marme, F., Aulmann, S., Sinn, H. P., van Essen, H. F., Ylstra, B., Hauptmann, M., Schneeweiss, A. & Linn, S. C., 2015, In : Clinical Cancer Research. 21, 4, p. 763-770

Research output: Contribution to journalArticleAcademicpeer-review

Collembolan Transcriptomes Highlight Molecular Evolution of Hexapods and Provide Clues on the Adaptation to Terrestrial Life

Faddeeva-Vakhrusheva, A., Studer, R. A., Kraaijeveld, K., Sie, D. L. S., Ylstra, B., Mariën, J., op den Camp, H. M. J., Datema, E., den Dunnen, J. T., van Straalen, N. M. & Roelofs, D., 2015, In : PLoS ONE. 10, 6, e0130600.

Research output: Contribution to journalArticleAcademicpeer-review

CopywriteR: DNA copy number detection from off-target sequence data

Kuilman, T., Velds, A., Kemper, K., Ranzani, M., Bombardelli, L., Hoogstraat, M., Nevedomskaya, E., Xu, G. T., de Ruiter, J., Lolkema, M. P., Ylstra, B., Jonkers, J., Rottenberg, S., Wessels, L. F., Adams, D. J., Peeper, D. S. & Krijgsman, O., 2015, In : Genome Biology. 16, 49.

Research output: Contribution to journalArticleAcademicpeer-review

Defects in the Fanconi Anemia Pathway and Chromatid Cohesion in Head and Neck Cancer

Stoepker, C., Ameziane, N., van der Lelij, P., Kooi, I. E., Oostra, A. B., Rooimans, M. A., van Mil, S. E., van den Brink, A., Dietrich, R., Balk, J. A., Ylstra, B., Joenje, H., Feller, S. M. & Brakenhoff, R. H., 2015, In : Cancer Research. 75, 17, p. 3543-3553

Research output: Contribution to journalArticleAcademicpeer-review

Diagnostic challenges in survivors of early stage lung cancer

Vet, M. T. A., Thunnissen, E., Spoelstra, F. O. B., Ylstra, B., Slotman, B. J. & Senan, S., 2015, In : Lung Cancer. 90, 2, p. 212-216

Research output: Contribution to journalArticleAcademicpeer-review

Endogenous C1-inhibitor production and expression in the heart after acute myocardial infarction

Emmens, R. W., Baylan, U., Juffermans, L. J. M., Karia, R. V., Ylstra, B., Wouters, D., Zeerleder, S., Simsek, S., van Ham, M., Niessen, H. W. M. & Krijnen, P. A. J., 20 Oct 2015, In : Cardiovascular Pathology. 25, 1, p. 33-39 7 p.

Research output: Contribution to journalArticleAcademicpeer-review

Evolution of DNA repair defects during malignant progression of low-grade gliomas after temozolomide treatment

van Thuijl, H. F., Mazor, T., Johnson, BE., Fouse, S. D., Aihara, K., Hong, C. B., Malmstrom, A., Hallbeck, M., Heimans, J. J., Kloezeman, J. J., Stenmark-Askmalm, M., Lamfers, M. L. M., Saito, N., Aburatani, H., Mukasa, A., Berger, M. S., Soderkvist, P., Taylor, B. S., Molinaro, A. M., Wesseling, P. & 4 othersReijneveld, J. C., Chang, S. M., Ylstra, B. & Costello, J. F., 2015, In : Acta Neuropathologica. 129, 4, p. 597-607

Research output: Contribution to journalArticleAcademicpeer-review

High Prevalence and Clinical Relevance of Genes Affected by Chromosomal Breaks in Colorectal Cancer

van den Broek, E., Dijkstra, M. J. J., Krijgsman, O., Sie, D. L. S., Haan, J. C., Traets, J. J. H., van de Wiel, M. A., Nagtegaal, I. D., Punt, C. J. A., Carvalho, B., Ylstra, B., Abeln, S., Meijer, G. A. & Fijneman, R. J. A., 2015, In : PLoS ONE. 10, 9, e0138141.

Research output: Contribution to journalArticleAcademicpeer-review

IDH mutation status and role of WHO grade and mitotic index in overall survival in grade II-III diffuse gliomas

Olar, A., Wani, K. M., Alfaro-Munoz, K. D., Heathcock, L. E., van Thuijl, H. F., Gilbert, M. R., Armstrong, T. S., Sulman, E. P., Cahill, D. P., Vera-Bolanos, E., Yuan, Y., Reijneveld, J. C., Ylstra, B., Wesseling, P. & Aldape, K. D., 2015, In : Acta Neuropathologica. 129, 4, p. 585-596

Research output: Contribution to journalArticleAcademicpeer-review

Landscape of chromosomal copy number aberrations in gangliogliomas and dysembryoplastic neuroepithelial tumours

Prabowo, A. S., van Thuijl, H. F., Scheinin, I., Sie, D. L. S., van Essen, H. F., Iyer, A. M., Spliet, W. G. M., Ferrier, C. H., van Rijen, P. C., Veersema, T. J., Thom, M., Schouten-van Meeteren, A. Y. N., Reijneveld, J. C., Ylstra, B., Wesseling, P. & Aronica, E., 2015, In : Neuropathology and Applied Neurobiology. 41, 6, p. 743-755

Research output: Contribution to journalArticleAcademicpeer-review

M-CSF Priming of Osteoclast Precursors Can Cause Osteoclastogenesis-Insensitivity, Which Can be Prevented and Overcome on Bone

de Vries, T. J., Schoenmaker, T., Aerts, D., Grevers, L. C., Souza, P. P. C., Nazmi, K., van de Wiel, M. A., Ylstra, B., van Lent, P. L., Leenen, P. J. M. & Everts, V., 2015, In : Journal of Cellular Physiology. 230, 1, p. 210-225

Research output: Contribution to journalArticleAcademicpeer-review

MiR expression profiles of paired primary colorectal cancer and metastases by next-generation sequencing

Neerincx, M., Sie, D. L. S., van de Wiel, M. A., van Grieken, N. C. T., Burggraaf, J. D., Dekker, H., Eijk, P. P., Ylstra, B., Verhoef, C., Meijer, G. A., Buffart, T. E. & Verheul, H. M. W., 2015, In : Oncogenesis. 4, e170.

Research output: Contribution to journalArticleAcademicpeer-review

Novel variant of EATL evolving from mucosal γδ-T-cells in a patient with type I RCD

van Wanrooij, R. L. J., de Jong, D., Langerak, A. W., Ylstra, B., van Essen, H. F., Heideman, D. A. M., Bontkes, H. J., Mulder, C. J. J. & Bouma, G., 1 Jan 2015, In : BMJ open gastroenterology. 2, 1, e000026.

Research output: Contribution to journalArticleAcademicpeer-review

Proper genomic profiling of (BRCA1-mutated) basal-like breast carcinomas requires prior removal of tumor infiltrating lymphocytes

Massink, M. P. G., Kooi, E. I., van Mil, S. E., Jordanova, E. S., Ameziane, N., Dorsman, J. C., van Beek, D. M., van der Voorn, J. P., Sie, D. L. S., Ylstra, B., van Deurzen, C. L. H. M., Martens, J. W., Smid, M., Sieuwerts, A. M., de Weerd, V., Foekens, J. A., van den Ouweland, A. M. W., van Dyk, E., Nederlof, P. M., Waisfisz, Q. & 1 othersMeijers-Heijboer, H., 2015, In : Molecular oncology. 9, 4, p. 877-888

Research output: Contribution to journalArticleAcademicpeer-review

Reduced rate of copy number aberrations in mucinous colorectal carcinoma

Hugen, N., Simmer, F., Mekenkamp, L. J. M., Koopman, M., van den Broek, E., de Wilt, J. H. W., Punt, C. J. A., Ylstra, B., Meijer, G. A. & Nagtegaal, I. D., 2015, In : Oncotarget. 6, 28, p. 25715-25725

Research output: Contribution to journalArticleAcademicpeer-review

RNA-Seq of Tumor-Educated Platelets Enables Blood-Based Pan-Cancer, Multiclass, and Molecular Pathway Cancer Diagnostics

Best, M. G., Sol, N., Kooi, E. I., Tannous, J., Westerman, A., Rustenburg, F., Schellen, P., Verschueren, H., Post, E., Koster, J., Ylstra, B., Ameziane, N., Dorsman, J., Smit, E. F., Verheul, H. M., Noske, D. P., Reijneveld, J. C., Nilsson, R. J. A., Tannous, B. A., Wesseling, P. & 1 othersWurdinger, T., 2015, In : Cancer Cell. 28, 5, p. 666-676

Research output: Contribution to journalArticleAcademicpeer-review

Signatures of tumour immunity distinguish Asian and non-Asian gastric adenocarcinomas

Lin, S. J., Gagnon-Bartsch, J. A., Tan, I. B., Earle, S., Ruff, L., Pettinger, K., Ylstra, B., van Grieken, N., Rha, S. Y., Chung, H. C., Lee, J. S., Cheong, J. H., Noh, S. H., Aoyama, T., Miyagi, Y., Tsuburaya, A., Yoshikawa, T., Ajani, J. A., Boussioutas, A., Yeoh, K. G. & 11 othersYong, W. P., So, J., van der Lee, J., Kang, W. K., Kim, S., Kameda, Y., Arai, T., zur Hausen, A., Speed, T. P., Grabsch, H. I. & Tan, P., 2015, In : Gut. 64, 11, p. 1721-1731

Research output: Contribution to journalArticleAcademicpeer-review

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Somatic mutation in PIK3CA is a late event in cervical carcinogenesis

Verlaat, W., Snijders, P. J. F., van Moorsel, M. I. H., Bleeker, M. C. G., Rozendaal, L., Sie, D. L. S., Ylstra, B., Meijer, C. J. L. M., Steenbergen, R. D. M. & Heideman, D. A. M., 2015, In : The Journal of Pathology: Clinical Research. 1, 4, p. 207-211

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Variant Rett syndrome in a girl with a pericentric X-chromosome inversion leading to epigenetic changes and overexpression of the MECP2 gene

Vieira, J. P., Lopes, F., Silva-Fernandes, A., Sousa, M. V., Moura, S., Sousa, S., Costa, B. M., Barbosa, M., Ylstra, B., Temudo, T., Lourenco, T. & Maciel, P., 2015, In : International Journal of Developmental Neuroscience. 46, p. 82-87

Research output: Contribution to journalArticleAcademicpeer-review