TY - JOUR
T1 - Diagnostic accuracy of liquid biopsy in endometrial cancer
AU - Łukasiewicz, Marta
AU - Pastuszak, Krzysztof
AU - Łapińska-Szumczyk, Sylwia
AU - Różański, Robert
AU - in ‘t Veld, Sjors G. J. G.
AU - Bieńkowski, Michał
AU - Stokowy, Tomasz
AU - Ratajska, Magdalena
AU - Best, Myron G.
AU - Würdinger, Thomas
AU - Żaczek, Anna J.
AU - Supernat, Anna
AU - Jassem, Jacek
N1 - Funding Information:
Acknowledgments: We acknowledge dr Agnieszka Anielska, Maciej Bora and Tomasz Bączek for support within the “Excellence of Scientific Publications Unit” located at Medical University of Gdańsk, Poland. We would like to thank dr Peter Grešner for providing biostatistics consultation within the services of the Centre of Biostatistics and Bioinformatics located at Medical University of Gdańsk, Poland. Both units are working as part of “Excellence Initiative—Research University" grant No. MNiSW 07/IDUB/2019/94. We would also like to thank Olga Marmól, Ewa Dacewicz, Joanna Lubińska, Edyta Wójcik and Marzena Zorn for blood collection from the patients included in the study.
Funding Information:
The research was supported by the Medical University of Gda?sk statutory work (ST-23, 02-0023/07). We acknowledge dr Agnieszka Anielska, Maciej Bora and Tomasz B ?aczek for support within the ?Excellence of Scientific Publications Unit? located at Medical University of Gda?sk, Poland. We would like to thank dr Peter Gre?ner for providing biostatistics consultation within the services of the Centre of Biostatistics and Bioinformatics located at Medical University of Gda?sk, Poland. Both units are working as part of ?Excellence Initiative?Research University" grant No. MNiSW 07/IDUB/2019/94. We would also like to thank Olga Marm?l, Ewa Dacewicz, Joanna Lubi?ska, Edyta W?jcik and Marzena Zorn for blood collection from the patients included in the study.
Funding Information:
Funding: The research was supported by the Medical University of Gdańsk statutory work (ST-23, 02-0023/07).
Publisher Copyright:
© 2021 by the authors. Licensee MDPI, Basel, Switzerland.
PY - 2021/11/1
Y1 - 2021/11/1
N2 - Background: Liquid biopsy is a minimally invasive collection of a patient body fluid sample. In oncology, they offer several advantages compared to traditional tissue biopsies. However, the potential of this method in endometrial cancer (EC) remains poorly explored. We studied the utility of tumor educated platelets (TEPs) and circulating tumor DNA (ctDNA) for preoperative EC diagnosis, including histology determination. Methods: TEPs from 295 subjects (53 EC patients, 38 patients with benign gynecologic conditions, and 204 healthy women) were RNA-sequenced. DNA sequencing data were obtained for 519 primary tumor tissues and 16 plasma samples. Artificial intelligence was applied to sample classification. Results: Platelet-dedicated classifier yielded AUC of 97.5% in the test set when discriminating between healthy subjects and cancer patients. However, the discrimination between endometrial cancer and benign gynecologic conditions was more challenging, with AUC of 84.1%. ctDNA-dedicated classifier discriminated primary tumor tissue samples with AUC of 96% and ctDNA blood samples with AUC of 69.8%. Conclusions: Liquid biopsies show potential in EC diagnosis. Both TEPs and ctDNA profiles coupled with artificial intelligence constitute a source of useful information. Further work involving more cases is warranted.
AB - Background: Liquid biopsy is a minimally invasive collection of a patient body fluid sample. In oncology, they offer several advantages compared to traditional tissue biopsies. However, the potential of this method in endometrial cancer (EC) remains poorly explored. We studied the utility of tumor educated platelets (TEPs) and circulating tumor DNA (ctDNA) for preoperative EC diagnosis, including histology determination. Methods: TEPs from 295 subjects (53 EC patients, 38 patients with benign gynecologic conditions, and 204 healthy women) were RNA-sequenced. DNA sequencing data were obtained for 519 primary tumor tissues and 16 plasma samples. Artificial intelligence was applied to sample classification. Results: Platelet-dedicated classifier yielded AUC of 97.5% in the test set when discriminating between healthy subjects and cancer patients. However, the discrimination between endometrial cancer and benign gynecologic conditions was more challenging, with AUC of 84.1%. ctDNA-dedicated classifier discriminated primary tumor tissue samples with AUC of 96% and ctDNA blood samples with AUC of 69.8%. Conclusions: Liquid biopsies show potential in EC diagnosis. Both TEPs and ctDNA profiles coupled with artificial intelligence constitute a source of useful information. Further work involving more cases is warranted.
KW - Artificial intelligence
KW - Circulating tumor DNA
KW - Endometrial cancer
KW - Liquid biopsy
KW - Molecular mark-ers
KW - Tumor educated platelets
UR - http://www.scopus.com/inward/record.url?scp=85118976748&partnerID=8YFLogxK
U2 - 10.3390/cancers13225731
DO - 10.3390/cancers13225731
M3 - Article
C2 - 34830891
SN - 2072-6694
VL - 13
JO - Cancers (Basel)
JF - Cancers (Basel)
IS - 22
M1 - 5731
ER -