TY - JOUR
T1 - Efficient high cone-angle artifact reduction in circular cone-beam CT using deep learning with geometry-aware dimension reduction
AU - Minnema, Jordi
AU - Van Eijnatten, Maureen
AU - Der Sarkissian, Henri
AU - Doyle, Shannon
AU - Koivisto, Juha
AU - Wolff, Jan
AU - Forouzanfar, Tymour
AU - Lucka, Felix
AU - Batenburg, Kees Joost
N1 - Funding Information:
This work was supported by the Netherlands Organisation for Scientific Research (NWO) project number 639.073.506; and by Planmeca Oy. In addition, MvE, FL and KJB acknowledge financial support by Holland High Tech through the PPP allowance for research and development in theHTSMtopsector.
Publisher Copyright:
© 2021 Institute of Physics and Engineering in Medicine.
PY - 2021/7/7
Y1 - 2021/7/7
N2 - High cone-angle artifacts (HCAAs) appear frequently in circular cone-beam computed tomography (CBCT) images and can heavily affect diagnosis and treatment planning. To reduce HCAAs in CBCT scans, we propose a novel deep learning approach that reduces the three-dimensional (3D) nature of HCAAs to two-dimensional (2D) problems in an efficient way. Specifically, we exploit the relationship between HCAAs and the rotational scanning geometry by training a convolutional neural network (CNN) using image slices that were radially sampled from CBCT scans. We evaluated this novel approach using a dataset of input CBCT scans affected by HCAAs and high-quality artifact-free target CBCT scans. Two different CNN architectures were employed, namely U-Net and a mixed-scale dense CNN (MS-D Net). The artifact reduction performance of the proposed approach was compared to that of a Cartesian slice-based artifact reduction deep learning approach in which a CNN was trained to remove the HCAAs from Cartesian slices. In addition, all processed CBCT scans were segmented to investigate the impact of HCAAs reduction on the quality of CBCT image segmentation. We demonstrate that the proposed deep learning approach with geometry-aware dimension reduction greatly reduces HCAAs in CBCT scans and outperforms the Cartesian slice-based deep learning approach. Moreover, the proposed artifact reduction approach markedly improves the accuracy of the subsequent segmentation task compared to the Cartesian slice-based workflow.
AB - High cone-angle artifacts (HCAAs) appear frequently in circular cone-beam computed tomography (CBCT) images and can heavily affect diagnosis and treatment planning. To reduce HCAAs in CBCT scans, we propose a novel deep learning approach that reduces the three-dimensional (3D) nature of HCAAs to two-dimensional (2D) problems in an efficient way. Specifically, we exploit the relationship between HCAAs and the rotational scanning geometry by training a convolutional neural network (CNN) using image slices that were radially sampled from CBCT scans. We evaluated this novel approach using a dataset of input CBCT scans affected by HCAAs and high-quality artifact-free target CBCT scans. Two different CNN architectures were employed, namely U-Net and a mixed-scale dense CNN (MS-D Net). The artifact reduction performance of the proposed approach was compared to that of a Cartesian slice-based artifact reduction deep learning approach in which a CNN was trained to remove the HCAAs from Cartesian slices. In addition, all processed CBCT scans were segmented to investigate the impact of HCAAs reduction on the quality of CBCT image segmentation. We demonstrate that the proposed deep learning approach with geometry-aware dimension reduction greatly reduces HCAAs in CBCT scans and outperforms the Cartesian slice-based deep learning approach. Moreover, the proposed artifact reduction approach markedly improves the accuracy of the subsequent segmentation task compared to the Cartesian slice-based workflow.
KW - artifact reduction
KW - cone-beam computed tomography
KW - convolutional neural networks
KW - deep learning
UR - http://www.scopus.com/inward/record.url?scp=85110727785&partnerID=8YFLogxK
U2 - 10.1088/1361-6560/ac09a1
DO - 10.1088/1361-6560/ac09a1
M3 - Article
C2 - 34107467
AN - SCOPUS:85110727785
SN - 0031-9155
VL - 66
JO - Physics in Medicine and Biology
JF - Physics in Medicine and Biology
IS - 13
M1 - 135015
ER -