Pilot whole-exome sequencing of a German early-onset Alzheimer's disease cohort reveals a substantial frequency of PSEN2 variants

Cornelis Blauwendraat, Carlo Wilke, Iris E. Jansen, Claudia Schulte, Javier Simón-Sánchez, Florian G. Metzger, Benjamin Bender, Thomas Gasser, Walter Maetzler, Patrizia Rizzu, Peter Heutink, Matthis Synofzik

Research output: Contribution to journalArticleAcademicpeer-review

Abstract

Early-onset Alzheimer's disease (EOAD) accounts for 1%-2% of all Alzheimer's disease (AD) subjects, with large variation in the reported genetic contribution of known dementia genes. In this pilot study, we genetically characterized a German EOAD cohort (23 subjects) by whole-exome sequencing, capturing variants in all recognized AD and frontotemporal dementia genes. After variant filtering, we identified 7 events of altogether 6 different rare variants in 6 subjects, including 4 novel variants. Four of the 6 variants, observed in 5 different index subjects (5/23 = 22%), were considered to be possibly pathogenic. These included 2 presenilin 2 (PSEN2) variants (p.N141I-previously denoted as a Volga German variant, observed in 2 index subjects; and p.L238P), 1 amyloid precursor protein (p.I716M), and 1 presenilin 1 (ΔE9). Using a control exome data set of 96 ethnically matched neurodegenerative disease controls (Parkinson's disease), we identified only 1 variant (PSEN2 p.T18M) (1%), demonstrating a significantly higher mutational burden in the EOAD group (p > 0.0001). Our findings demonstrate a substantial frequency of variants in dementia genes in EOAD, including several seemingly "sporadic" subjects. This indicates that heritability in EOAD might be higher than assumed. The finding of 3 subjects carrying potential pathogenic PSEN2 variants suggests that, in specific populations PSEN2 variants might be as frequent as (or more frequent than) presenilin 1, for example, in German populations which are influenced by Volga German heritage. Variants in AD genes were also associated with rare phenotypes such as frontal AD or primary progressive aphasia, demonstrating the need to screen AD genes in frontotemporal dementia-like phenotypes.

Original languageEnglish
Pages (from-to)208.e11-208.e18
JournalNeurobiology of Aging
Volume37
DOIs
Publication statusPublished - 1 Jan 2016

Cite this

Blauwendraat, Cornelis ; Wilke, Carlo ; Jansen, Iris E. ; Schulte, Claudia ; Simón-Sánchez, Javier ; Metzger, Florian G. ; Bender, Benjamin ; Gasser, Thomas ; Maetzler, Walter ; Rizzu, Patrizia ; Heutink, Peter ; Synofzik, Matthis. / Pilot whole-exome sequencing of a German early-onset Alzheimer's disease cohort reveals a substantial frequency of PSEN2 variants. In: Neurobiology of Aging. 2016 ; Vol. 37. pp. 208.e11-208.e18.
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title = "Pilot whole-exome sequencing of a German early-onset Alzheimer's disease cohort reveals a substantial frequency of PSEN2 variants",
abstract = "Early-onset Alzheimer's disease (EOAD) accounts for 1{\%}-2{\%} of all Alzheimer's disease (AD) subjects, with large variation in the reported genetic contribution of known dementia genes. In this pilot study, we genetically characterized a German EOAD cohort (23 subjects) by whole-exome sequencing, capturing variants in all recognized AD and frontotemporal dementia genes. After variant filtering, we identified 7 events of altogether 6 different rare variants in 6 subjects, including 4 novel variants. Four of the 6 variants, observed in 5 different index subjects (5/23 = 22{\%}), were considered to be possibly pathogenic. These included 2 presenilin 2 (PSEN2) variants (p.N141I-previously denoted as a Volga German variant, observed in 2 index subjects; and p.L238P), 1 amyloid precursor protein (p.I716M), and 1 presenilin 1 (ΔE9). Using a control exome data set of 96 ethnically matched neurodegenerative disease controls (Parkinson's disease), we identified only 1 variant (PSEN2 p.T18M) (1{\%}), demonstrating a significantly higher mutational burden in the EOAD group (p > 0.0001). Our findings demonstrate a substantial frequency of variants in dementia genes in EOAD, including several seemingly {"}sporadic{"} subjects. This indicates that heritability in EOAD might be higher than assumed. The finding of 3 subjects carrying potential pathogenic PSEN2 variants suggests that, in specific populations PSEN2 variants might be as frequent as (or more frequent than) presenilin 1, for example, in German populations which are influenced by Volga German heritage. Variants in AD genes were also associated with rare phenotypes such as frontal AD or primary progressive aphasia, demonstrating the need to screen AD genes in frontotemporal dementia-like phenotypes.",
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author = "Cornelis Blauwendraat and Carlo Wilke and Jansen, {Iris E.} and Claudia Schulte and Javier Sim{\'o}n-S{\'a}nchez and Metzger, {Florian G.} and Benjamin Bender and Thomas Gasser and Walter Maetzler and Patrizia Rizzu and Peter Heutink and Matthis Synofzik",
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Blauwendraat, C, Wilke, C, Jansen, IE, Schulte, C, Simón-Sánchez, J, Metzger, FG, Bender, B, Gasser, T, Maetzler, W, Rizzu, P, Heutink, P & Synofzik, M 2016, 'Pilot whole-exome sequencing of a German early-onset Alzheimer's disease cohort reveals a substantial frequency of PSEN2 variants' Neurobiology of Aging, vol. 37, pp. 208.e11-208.e18. https://doi.org/10.1016/j.neurobiolaging.2015.09.016

Pilot whole-exome sequencing of a German early-onset Alzheimer's disease cohort reveals a substantial frequency of PSEN2 variants. / Blauwendraat, Cornelis; Wilke, Carlo; Jansen, Iris E.; Schulte, Claudia; Simón-Sánchez, Javier; Metzger, Florian G.; Bender, Benjamin; Gasser, Thomas; Maetzler, Walter; Rizzu, Patrizia; Heutink, Peter; Synofzik, Matthis.

In: Neurobiology of Aging, Vol. 37, 01.01.2016, p. 208.e11-208.e18.

Research output: Contribution to journalArticleAcademicpeer-review

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T1 - Pilot whole-exome sequencing of a German early-onset Alzheimer's disease cohort reveals a substantial frequency of PSEN2 variants

AU - Blauwendraat, Cornelis

AU - Wilke, Carlo

AU - Jansen, Iris E.

AU - Schulte, Claudia

AU - Simón-Sánchez, Javier

AU - Metzger, Florian G.

AU - Bender, Benjamin

AU - Gasser, Thomas

AU - Maetzler, Walter

AU - Rizzu, Patrizia

AU - Heutink, Peter

AU - Synofzik, Matthis

PY - 2016/1/1

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N2 - Early-onset Alzheimer's disease (EOAD) accounts for 1%-2% of all Alzheimer's disease (AD) subjects, with large variation in the reported genetic contribution of known dementia genes. In this pilot study, we genetically characterized a German EOAD cohort (23 subjects) by whole-exome sequencing, capturing variants in all recognized AD and frontotemporal dementia genes. After variant filtering, we identified 7 events of altogether 6 different rare variants in 6 subjects, including 4 novel variants. Four of the 6 variants, observed in 5 different index subjects (5/23 = 22%), were considered to be possibly pathogenic. These included 2 presenilin 2 (PSEN2) variants (p.N141I-previously denoted as a Volga German variant, observed in 2 index subjects; and p.L238P), 1 amyloid precursor protein (p.I716M), and 1 presenilin 1 (ΔE9). Using a control exome data set of 96 ethnically matched neurodegenerative disease controls (Parkinson's disease), we identified only 1 variant (PSEN2 p.T18M) (1%), demonstrating a significantly higher mutational burden in the EOAD group (p > 0.0001). Our findings demonstrate a substantial frequency of variants in dementia genes in EOAD, including several seemingly "sporadic" subjects. This indicates that heritability in EOAD might be higher than assumed. The finding of 3 subjects carrying potential pathogenic PSEN2 variants suggests that, in specific populations PSEN2 variants might be as frequent as (or more frequent than) presenilin 1, for example, in German populations which are influenced by Volga German heritage. Variants in AD genes were also associated with rare phenotypes such as frontal AD or primary progressive aphasia, demonstrating the need to screen AD genes in frontotemporal dementia-like phenotypes.

AB - Early-onset Alzheimer's disease (EOAD) accounts for 1%-2% of all Alzheimer's disease (AD) subjects, with large variation in the reported genetic contribution of known dementia genes. In this pilot study, we genetically characterized a German EOAD cohort (23 subjects) by whole-exome sequencing, capturing variants in all recognized AD and frontotemporal dementia genes. After variant filtering, we identified 7 events of altogether 6 different rare variants in 6 subjects, including 4 novel variants. Four of the 6 variants, observed in 5 different index subjects (5/23 = 22%), were considered to be possibly pathogenic. These included 2 presenilin 2 (PSEN2) variants (p.N141I-previously denoted as a Volga German variant, observed in 2 index subjects; and p.L238P), 1 amyloid precursor protein (p.I716M), and 1 presenilin 1 (ΔE9). Using a control exome data set of 96 ethnically matched neurodegenerative disease controls (Parkinson's disease), we identified only 1 variant (PSEN2 p.T18M) (1%), demonstrating a significantly higher mutational burden in the EOAD group (p > 0.0001). Our findings demonstrate a substantial frequency of variants in dementia genes in EOAD, including several seemingly "sporadic" subjects. This indicates that heritability in EOAD might be higher than assumed. The finding of 3 subjects carrying potential pathogenic PSEN2 variants suggests that, in specific populations PSEN2 variants might be as frequent as (or more frequent than) presenilin 1, for example, in German populations which are influenced by Volga German heritage. Variants in AD genes were also associated with rare phenotypes such as frontal AD or primary progressive aphasia, demonstrating the need to screen AD genes in frontotemporal dementia-like phenotypes.

KW - Alzheimer's disease

KW - Early-onset dementia

KW - Exome sequencing

KW - Frontotemporal dementia

KW - PSEN2

KW - Volga German N141I

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U2 - 10.1016/j.neurobiolaging.2015.09.016

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SP - 208.e11-208.e18

JO - Neurobiology of Aging

JF - Neurobiology of Aging

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