Abstract
Original language | English |
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Pages (from-to) | 695-710.e6 |
Journal | Cell Metabolism |
Volume | 35 |
Issue number | 4 |
DOIs | |
Publication status | Published - 4 Apr 2023 |
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The Type 2 Diabetes Knowledge Portal : An open access genetic resource dedicated to type 2 diabetes and related traits. / AMP-T2D Consortium.
In: Cell Metabolism, Vol. 35, No. 4, 04.04.2023, p. 695-710.e6.Research output: Contribution to journal › Article › Academic › peer-review
TY - JOUR
T1 - The Type 2 Diabetes Knowledge Portal
T2 - An open access genetic resource dedicated to type 2 diabetes and related traits
AU - Costanzo, Maria C.
AU - von Grotthuss, Marcin
AU - Massung, Jeffrey
AU - Jang, Dongkeun
AU - Caulkins, Lizz
AU - Koesterer, Ryan
AU - Gilbert, Clint
AU - Welch, Ryan P.
AU - Kudtarkar, Parul
AU - Hoang, Quy
AU - Boughton, Andrew P.
AU - Singh, Preeti
AU - Sun, Ying
AU - Duby, Marc
AU - Moriondo, Annie
AU - Nguyen, Trang
AU - Smadbeck, Patrick
AU - Alexander, Benjamin R.
AU - Brandes, MacKenzie
AU - Carmichael, Mary
AU - Dornbos, Peter
AU - Green, Todd
AU - Huellas-Bruskiewicz, Kenneth C.
AU - Ji, Yue
AU - Kluge, Alexandria
AU - McMahon, Aoife C.
AU - Mercader, Josep M.
AU - Ruebenacker, Oliver
AU - Sengupta, Sebanti
AU - Spalding, Dylan
AU - Taliun, Daniel
AU - Abecasis, Gonçalo
AU - Akolkar, Beena
AU - Allred, Nicholette D.
AU - Altshuler, David
AU - Below, Jennifer E.
AU - Bergman, Richard
AU - Beulens, Joline W. J.
AU - Blangero, John
AU - Boehnke, Michael
AU - Bokvist, Krister
AU - Bottinger, Erwin
AU - Bowden, Donald
AU - Brosnan, M. Julia
AU - Brown, Christopher
AU - Bruskiewicz, Kenneth
AU - Burtt, Noël P.
AU - Cebola, Inês
AU - Chambers, John
AU - Ida Chen, Yii-Der
AU - Cherkas, Andriy
AU - Chu, Audrey Y.
AU - Clark, Christopher
AU - Claussnitzer, Melina
AU - Cox, Nancy J.
AU - Hoed, Marcel den
AU - Dong, Duc
AU - Duggirala, Ravindranath
AU - Dupuis, Josée
AU - Elders, Petra J. M.
AU - Engreitz, Jesse M.
AU - Fauman, Eric
AU - Ferrer, Jorge
AU - Flannick, Jason
AU - Flicek, Paul
AU - Flickinger, Matthew
AU - Florez, Jose C.
AU - Fox, Caroline S.
AU - Frayling, Timothy M.
AU - Frazer, Kelly A.
AU - Gaulton, Kyle J.
AU - Gloyn, Anna L.
AU - Hanis, Craig L.
AU - Hanson, Robert
AU - Hattersley, Andrew T.
AU - Im, Hae Kyung
AU - Iqbal, Sidra
AU - Jacobs, Suzanne B. R.
AU - Jang, Dong-Keun
AU - Jordan, Tad
AU - Kamphaus, Tania
AU - Karpe, Fredrik
AU - Keane, Thomas M.
AU - Kim, Seung K.
AU - Lage, Kasper
AU - Lange, Leslie A.
AU - Lazar, Mitchell
AU - Lehman, Donna
AU - Liu, Ching-Ti
AU - Loos, Ruth J. F.
AU - Ma, Ronald Ching-wan
AU - MacDonald, Patrick
AU - Maurano, Matthew T.
AU - McCarthy, Mark I.
AU - McVean, Gil
AU - Meigs, James B.
AU - Miller, Melissa R.
AU - Mitchell, Braxton
AU - Mohlke, Karen L.
AU - Morabito, Samuel
AU - Morgan, Claire
AU - Mullican, Shannon
AU - Narendra, Sharvari
AU - Ng, Maggie C. Y.
AU - Nguyen, Lynette
AU - Palmer, Colin N. A.
AU - Parker, Stephen C. J.
AU - Parrado, Antonio
AU - Parsa, Afshin
AU - Pawlyk, Aaron C.
AU - Pearson, Ewan R.
AU - Plump, Andrew
AU - Province, Michael
AU - Quertermous, Thomas
AU - Redline, Susan
AU - Reilly, Dermot F.
AU - Ren, Bing
AU - Rich, Stephen S.
AU - Richards, J. Brent
AU - Rotter, Jerome I.
AU - Ruetten, Hartmut
AU - Salem, Rany M.
AU - Sander, Maike
AU - Sanders, Michael
AU - Sanghera, Dharambir
AU - Scott, Laura J.
AU - Siedzik, David
AU - Sim, Xueling
AU - Sladek, Robert
AU - Small, Kerrin
AU - Smith, Philip
AU - Stein, Peter
AU - Stringham, Heather M.
AU - Susztak, Katalin
AU - ’t Hart, Leen M.
AU - Taylor, Kent
AU - Thomas, Melissa K.
AU - Todd, Jennifer A.
AU - Udler, Miriam S.
AU - Voight, Benjamin
AU - Wan, Andre
AU - Wholley, David
AU - Yuksel, Kaan
AU - Zaghloul, Norann A.
AU - Fauman, Eric B.
AU - Kamphaus, Tania Nayak
AU - Abecasis, Gonçalo R.
AU - AMP-T2D Consortium
N1 - Funding Information: This work was supported predominantly by 2UM1DK105554. Other funding that supported this work includes R01HG009976 (M.B.); NHGRI grant FAIN# U01HG011723 (J.M.M.); NIDDK U01DK105535 (M.I.M.); and RFP awards 1, 2, 3, 4, 7, 8a, 8b, 9, 10, 11, 13, 14, 15, and 16 from the Foundation for the National Institutes of Health . J.M.M. was supported by American Diabetes Association Innovative and Clinical Translational Award 1-19-ICTS-068 . M.I.M. was a Wellcome Investigator and an NIHR Senior Investigator ( Wellcome : 090532 , 098381 , 106130 , 203141 , and 212259 ). P.D. was supported by R01DK125490 . Publisher Copyright: © 2023 The Author(s)
PY - 2023/4/4
Y1 - 2023/4/4
N2 - Associations between human genetic variation and clinical phenotypes have become a foundation of biomedical research. Most repositories of these data seek to be disease-agnostic and therefore lack disease-focused views. The Type 2 Diabetes Knowledge Portal (T2DKP) is a public resource of genetic datasets and genomic annotations dedicated to type 2 diabetes (T2D) and related traits. Here, we seek to make the T2DKP more accessible to prospective users and more useful to existing users. First, we evaluate the T2DKP's comprehensiveness by comparing its datasets with those of other repositories. Second, we describe how researchers unfamiliar with human genetic data can begin using and correctly interpreting them via the T2DKP. Third, we describe how existing users can extend their current workflows to use the full suite of tools offered by the T2DKP. We finally discuss the lessons offered by the T2DKP toward the goal of democratizing access to complex disease genetic results.
AB - Associations between human genetic variation and clinical phenotypes have become a foundation of biomedical research. Most repositories of these data seek to be disease-agnostic and therefore lack disease-focused views. The Type 2 Diabetes Knowledge Portal (T2DKP) is a public resource of genetic datasets and genomic annotations dedicated to type 2 diabetes (T2D) and related traits. Here, we seek to make the T2DKP more accessible to prospective users and more useful to existing users. First, we evaluate the T2DKP's comprehensiveness by comparing its datasets with those of other repositories. Second, we describe how researchers unfamiliar with human genetic data can begin using and correctly interpreting them via the T2DKP. Third, we describe how existing users can extend their current workflows to use the full suite of tools offered by the T2DKP. We finally discuss the lessons offered by the T2DKP toward the goal of democratizing access to complex disease genetic results.
KW - CMDKP
KW - data sharing
KW - diabetes
KW - effector genes
KW - genetic associations
KW - genetic support
KW - genomics
KW - GWAS
KW - portal
KW - T2DKP
UR - https://www.scopus.com/inward/record.uri?partnerID=HzOxMe3b&scp=85151341357&origin=inward
UR - https://www.ncbi.nlm.nih.gov/pubmed/36963395
U2 - 10.1016/j.cmet.2023.03.001
DO - 10.1016/j.cmet.2023.03.001
M3 - Article
C2 - 36963395
SN - 1550-4131
VL - 35
SP - 695-710.e6
JO - Cell Metabolism
JF - Cell Metabolism
IS - 4
ER -